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addSampleData
- Add a sample with SNP data to the variantCell project
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aggregateByGroup
- aggregateByGroup: Aggregate SNP data by cell groups
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buildSNPDatabase
- Build a unified SNP database from all samples
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downsampleVariant
- downsampleVariant: Downsample Cells by Group to Balance Cell Numbers
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findDESNPs
- findDESNPs: Cell-Level Differential SNP Expression Analysis
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findSNPsByGroup
- findSNPsByGroup: Group-Level SNP Presence Analysis
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getCurrentIdentity
- getCurrentIdentity: Get Current Project-Wide Cell Identity Information
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plotSNPHeatmap
- plotSNPHeatmap: Create a heatmap visualization of SNP expression across cell groups
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plotSNPs
- plotSNPs "Visualize SNP Distribution for a Gene"
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process_tsv
- process_tsv: Process a TSV file with prefix addition
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process_vireo_dataframe
- process_vireo_dataframe: Integrate Vireo donor assignments with a metadata data frame
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process_vireo_sce
- process_vireo_sce: Integrate Vireo donor assignments with a SingleCellExperiment object
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process_vireo_seurat
- process_vireo_seurat: Integrate Vireo donor assignments with a Seurat object
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setProjectIdentity
- setProjectIdentity: Set Project-Wide Cell Identity Variable
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subsetVariantCell
- subsetVariantCell: Subset Cells Based on Metadata Values